![]() PeptideProphet TM – validation of peptide identifications made by tandem mass spectrometry (MS/MS) and database searching probabilities are assigned to the peptide identifications made by programs like SEQUEST or MASCOT.X!Tandem – open-source database search engine provided with TPP/li>.Comet – open-source database search engine provided with TPP.SpectraST TM – spectral library search engine provided by TPP.InsilicosViewer – viewer for displaying mzXML data.mzXMLViewer – viewer for displaying mzXML data.MzXML2Search – mzXML to SEQUEST dta, MASCOT generic and Micromass pkl converter.mzBruker – Bruker raw-to-mzXML converter.mzWiff – ABI/MDS Sciex Analyst raw-to-mzXML converter.massWolf – Waters MassLynx raw-to-mzXML converter.ReAdW – Thermo Xcalibur-to-mzXML converter.mzXML – standard format for mass-spectrometry data.Please see the SPC Tools Wiki for more information, including download information. The individual tools that make up the TPP, as well as a few which are not included in the TPP distrubution, are categorized below. Most users will only need to download the TPP distrubtion. The Trans-Proteomic Pipeline (TPP) includes all of the steps of the ISB MS/MS analysis pipeline, after the database search. ![]()
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